Tibbs-Cortes, Laura ... |  Guo, Tingting... -  《Genome research》 - 2024,34(8) - 1253～1263 - 共11页

摘要：Maize phenotypes are plastic, determined by the complex interplay of genetics and environmental variables. Uncovering the genes responsible and understanding how their effects change across a large ge...

关键词： PHOTOPERIOD SENSITIVITY |  POSTDOMESTICATION SPREAD |  GENE |  ASSOCIATION |  PREDICTION |  RESPONSES |  PLANT |  SELECTION |  GENOTYPE |  HERITABILITY

Woodhouse, Margaret ... |  Portwood, John L.... -  《Genetics: A Periodical Record of Investigations Bearing on Heredity and Variation》 - 2023,224(1) - 共9页 - 被引量：4

摘要：Protein structures play an important role in bioinformatics, such as in predicting gene function or validating gene model annotation. However, determining protein structure was, until now, costly and ...

关键词： maize |  genomics |  database |  genetics |  protein |  ASSOCIATION |  DIVERSITY |  SEQUENCE |  ARCHITECTURE |  ANNOTATION...

Woodhouse, Margaret ... |  Sen, Shatabdi... -  《Bioinformatics》 - 2022,38(1) - 236～242 - 共7页 - 被引量：12

摘要：Motivation: Over the last decade, RNA-Seq whole-genome sequencing has become a widely used method for measuring and understanding transcriptome-level changes in gene expression. Since RNA-Seq is relat...

关键词： RNA-SEQ |  MAIZE |  ARCHITECTURE |  ASSOCIATION |  DIVERSITY |  RESPONSES |  EVOLUTION |  DROUGHT |  STRESS |  LEVEL

Hufford, Matthew B. |  Seetharam, Arun S.... -  《Science》 - 2021,373(Aug.6 TN.6555) - 655～662 - 共8页 - 被引量：216

摘要：We report de novo genome assemblies, transcriptomes, annotations, and methylomes for the 26 inbreds that serve as the founders for the maize nested association mapping population. The number of pangen...

Braun, Bremen L. |  Schott, David A.... -  《Bioinformatics》 - 2019,35(20) - 4184～4186 - 共3页 - 被引量：1

摘要：Motivation: Plant breeding aims to improve current germplasm that can tolerate a wide range of biotic and abiotic stresses. To accomplish this goal, breeders rely on developing a deeper understanding ...

Springer, Nathan M. |  Anderson, Sarah N.... -  《Nature Genetics》 - 2018,50(9) - 1282～1288 - 共10页 - 被引量：92

摘要：The maize W22 inbred has served as a platform for maize genetics since the mid twentieth century. To streamline maize genome analyses, we have sequenced and de novo assembled a W22 reference genome us...

Law, MeiYee |  Childs, Kevin L.... -  《Plant physiology》 - 2015,167(1) - 25～39 - 共15页 - 被引量：28

摘要：The large size and relative complexity of many plant genomes make creation, quality control, and dissemination of high-quality gene structure annotations challenging. In response, we have developed MA...

Poretsky, Elly |  Cagirici, Halise Bus...... -  《G3: Genes, Genomes, Genetics》 - 2024,14(5) - 共12页

摘要：The recent assembly and annotation of the 26 maize nested association mapping population founder inbreds have enabled large-scale pan-genomic comparative studies. These studies have expanded our under...

关键词： Plant Genetics and Genomics |  pan-genome |  predicted protein-protein interactions (PPIs) |  interactome |  protein function |  gene candidate prioritization |  PROTEIN-PROTEIN INTERACTIONS |  FLOWERING TIME |  COEXPRESSION |  NETWORK...

Andorf, Carson M. |  Ross-Ibarra, Jeffrey... -  《G3: Genes, Genomes, Genetics》 - 2024,15(2) - 共9页 - 被引量：1

摘要：Efforts to capture and analyze maize nucleotide diversity have ranged widely in scope, but differences in reference genome version and software algorithms used in these efforts inhibit comparison, and...

关键词： maize |  variants |  diversity |  genome |  tools

Hayford, Rita K. |  Haley, Olivia C.... -  《bmc genomics》 - 2024,25(1) - 共16页 - 被引量：1

摘要：Background Environmental stress factors, such as biotic and abiotic stress, are becoming more common due to climate variability, significantly affecting global maize yield. Transcriptome profiling stu...

关键词： Differentially expressed genes |  Maize |  RNA-Sequencing |  Transcription factors |  Gene Ontology |  Abiotic stress |  Biotic stress |  SALINITY |  RESPONSES |  DROUGHT